課程大綱 Topics
(Lecture or Reading Order: 1, 2, …, 11.)
I.
Overview
1. Ion Channel
Nervous system (0:50) (Recital), Action Potentials (3:24), Potassium Channel (1:42),
Cell Membranes (11:03), Gibbs Free Energy (13:00)
II.
Numerical Methods
2. 1D Poisson’s Problem and Finite Difference Method
3. Jacobi’s Method
4. Newton’s Method
5. Scharfetter-Gummel (Exponential Fitting) Method
III. Mathematical Models with Fundamental
Physics
6. Poisson’s Equation in Electrostatics
7. Convection-Diffusion-Reaction Model
8. Poisson-Nernst-Planck (PNP) Model
9. VMD: 2011-VMD-Tutorial, 2009-VMD-Tutorial-KcsA, 2011-VMD-Steps-GA
教學目標 Objectives
·
Learn
basic Numerical Methods for Partial Differential Equations (PDEs)
·
Learn
basic Numerical Methods for Linear Algebra
·
Learn
basic Physics in PDEs
·
Learn
Programming in Scientific Computing
授課方式 Teaching Style
·
Regular
Lecturing
評分標準 Grading Policy
·
Reports
100%
教科書 Texts
·
Jinn-Liang
Liu, Lecture Notes on Numerical Methods for Partial Differential Equations,
2011.